8XT1 Summary
- Structure title
- Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
- Authors
- Li, X., Wang, M., Cheng, J.
- Release date
- 2024-07-10
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
- Chains
- 2 RNA chains from Homo sapiens
- 50 other chains
- Nucleic acid compounds
- Other compounds
- 16s rRNA, Val tRNA
- Large ribosomal subunit protein mL53, Large ribosomal subunit protein mL54, Large ribosomal subunit protein mL55, Large ribosomal subunit protein mL63, Large ribosomal subunit protein mL62, Large ribosomal subunit protein mL64, Large ribosomal subunit protein uL2m, Large ribosomal subunit protein uL3m, Large ribosomal subunit protein uL4m, Large ribosomal subunit protein bL9m, Large ribosomal subunit protein uL10m, Large ribosomal subunit protein uL11m, Large ribosomal subunit protein uL13m, Large ribosomal subunit protein uL14m, Large ribosomal subunit protein uL15m, Large ribosomal subunit protein uL16m, Large ribosomal subunit protein bL17m, Mitochondrial ribosomal protein L18, isoform CRA_b, Large ribosomal subunit protein bL19m, Large ribosomal subunit protein bL20m, Large ribosomal subunit protein bL21m, 39S ribosomal protein L22, mitochondrial, Large ribosomal subunit protein uL23m, Large ribosomal subunit protein uL24m, Large ribosomal subunit protein bL27m, Large ribosomal subunit protein bL28m, Large ribosomal subunit protein uL30m, Large ribosomal subunit protein bL32m, Large ribosomal subunit protein bL33m, Large ribosomal subunit protein bL34m, Large ribosomal subunit protein bL35m, Large ribosomal subunit protein bL36m, Large ribosomal subunit protein mL37, Large ribosomal subunit protein mL38, Large ribosomal subunit protein mL39, Large ribosomal subunit protein mL40, Large ribosomal subunit protein mL41, Large ribosomal subunit protein mL42, Large ribosomal subunit protein mL43, Large ribosomal subunit protein mL44, Large ribosomal subunit protein mL45, Large ribosomal subunit protein mL46, Large ribosomal subunit protein uL29m, Large ribosomal subunit protein mL48, Large ribosomal subunit protein mL49, Large ribosomal subunit protein mL50, Large ribosomal subunit protein mL51, 39S ribosomal protein L52, mitochondrial, Large ribosomal subunit protein mL66, Large ribosomal subunit protein mL65
Pairwise Interactions
Interactions annotated by FR3D:- 544 base-pairs
- 1,481 base-stacking
- 35 base-phosphate
- 32 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8XT1 contains:- 42 hairpin loops from 0 motif groups
- 57 internal loops from 0 motif groups
- 20 junction loops from 0 motif groups
3D Redundancy
8XT1 has chains which belong to the following equivalence classes in the current representative set:- NR_all_12763.31 (1)
- NR_all_73428.25 (1)
- NR_4.0_12763.31 (1)
- NR_4.0_73428.25 (1)
- NR_3.5_12763.31 (1)
- NR_3.5_73428.25 (1)
- NR_20.0_12763.31 (1)
- NR_20.0_73428.25 (1)
Similar structures
7QI4 8RRI 6ZM6 7OF0 7QI5 9CN3 7O9M 7OF6 8ANY 8OIT 7OF4 6ZM5 7OF7 7QI6 6VMI 8K2A 6VLZ 7OF2 8OIR 7OF3 7ODR 7L20 8XT3 7A5J 7OF5 8XT0 8QSJ 7ODT 8PK0 7ODS 7O9K 8XT2 5OOL 8K2B 7OIC 7A5H 7L08 7PO4 7QH7 7OIE 8QU5 6ZSC 7A5K 7A5I 7OID 6ZSD 7PD3 7OG4 7QH6 3J9M 6I9R 5OOM 6ZSG 6ZSA 6ZS9 7OIA 3J7Y 7A5G 8QU1 7OIB 7OI9 6NU2 7A5F 7OI8 7OI7 6ZSB 6NU3 6ZSE 7OI6Structures from NR_all_12763.31