HL_10FZ_029

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

10FZ|1|A|C|1322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10FZ_029 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.5631

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

10FZ|1|A|C|1314
10FZ|1|A|U|1315
10FZ|1|A|G|1316
10FZ|1|A|C|1317
10FZ|1|A|A|1318
10FZ|1|A|A|1319
10FZ|1|A|C|1320
10FZ|1|A|U|1321
10FZ|1|A|C|1322
10FZ|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19