HL_11DG_051

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

11DG|1|a|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11DG_051 not in the Motif Atlas

Geometric match to HL_8B0X_051

Geometric discrepancy: 0.3457

The information below is about HL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11DG|1|a|U|641
11DG|1|a|U|642
11DG|1|a|A|643
11DG|1|a|A|644
11DG|1|a|C|645
11DG|1|a|U|646
11DG|1|a|G|647

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L33

Chain 2

50S ribosomal protein L35