HL_11GG_017

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

11GG|1|C|U|787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_017 not in the Motif Atlas

Homologous match to HL_6CZR_088

Geometric discrepancy: 0.1582

The information below is about HL_6CZR_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

11GG|1|C|G|780
11GG|1|C|A|781
11GG|1|C|U|782
11GG|1|C|U|783
11GG|1|C|A|784
11GG|1|C|G|785
11GG|1|C|A|786
11GG|1|C|U|787
11GG|1|C|A|788
11GG|1|C|C|789
11GG|1|C|C|790

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11