HL_11GG_025

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

11GG|1|C|G|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.259

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

11GG|1|C|G|1083
11GG|1|C|U|1084
11GG|1|C|U|1085
11GG|1|C|A|1086
11GG|1|C|A|1087
11GG|1|C|G|1088
11GG|1|C|U|1089
11GG|1|C|C|1090

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain D

Small ribosomal subunit protein uS2

Chain n

Small ribosomal subunit protein uS7