HL_11GG_063

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_063 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1858

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

138

Unit IDs

11GG|1|I|G|1281
11GG|1|I|U|1282
11GG|1|I|G|1283
11GG|1|I|A|1284
11GG|1|I|A|1285
11GG|1|I|A|1286
11GG|1|I|A|1287
11GG|1|I|G|1288
11GG|1|I|C|1289

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL22

Chain V

Large ribosomal subunit protein bL17

Chain i

50S ribosomal protein L32