HL_11GG_076

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

11GG|1|I|A|1780, 11GG|1|I|U|1781, 11GG|1|I|U|1782, 11GG|1|I|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_076 not in the Motif Atlas

Geometric match to HL_9E6Q_045

Geometric discrepancy: 0.0847

The information below is about HL_9E6Q_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

11GG|1|I|U|1777
11GG|1|I|U|1778
11GG|1|I|U|1779
11GG|1|I|A|1780
11GG|1|I|U|1781
11GG|1|I|U|1782
11GG|1|I|A|1783
11GG|1|I|A|1784
11GG|1|I|A|1785
11GG|1|I|A|1786
11GG|1|I|A|1787

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34