HL_11GG_081

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

11GG|1|I|6MZ|2030, 11GG|1|I|A|2031, 11GG|1|I|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_081 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2093

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

11GG|1|I|G|2027
11GG|1|I|U|2028
11GG|1|I|G|2029
11GG|1|I|6MZ|2030
11GG|1|I|A|2031
11GG|1|I|G|2032
11GG|1|I|A|2033
11GG|1|I|U|2034
11GG|1|I|G|2035
11GG|1|I|C|2036

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL3

Chain Z

Ribosomal protein L21

Chain i

50S ribosomal protein L32