HL_11GG_085

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

11GG|1|I|A|2268, 11GG|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11GG_085 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.114

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11GG|1|I|C|2264
11GG|1|I|U|2265
11GG|1|I|A|2266
11GG|1|I|A|2267
11GG|1|I|A|2268
11GG|1|I|G|2269
11GG|1|I|A|2270
11GG|1|I|G|2271
11GG|1|I|U|2272
11GG|1|I|A|2273
11GG|1|I|A|2274
11GG|1|I|C|2275
11GG|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16

Chain e

50S ribosomal protein L27