HL_11HV_021

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

11HV|1|28|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_021 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.1461

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

11HV|1|28|C|1816
11HV|1|28|U|1817
11HV|1|28|G|1818
11HV|1|28|G|1819
11HV|1|28|U|1820
11HV|1|28|G|1821
11HV|1|28|U|1822
11HV|1|28|G|1823

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain L5

60S ribosomal protein L5