HL_11HV_025

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_025 not in the Motif Atlas

Homologous match to HL_9AXU_026

Geometric discrepancy: 0.4631

The information below is about HL_9AXU_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HV|1|28|U|2006
11HV|1|28|G|2007
11HV|1|28|U|2008
11HV|1|28|A|2009
11HV|1|28|A|2010
11HV|1|28|C|2011
11HV|1|28|A|2012
11HV|1|28|A|2013

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 40

Large ribosomal subunit protein eL40

Chain s

60S acidic ribosomal protein P0

Chain t

uL11

Chain v

Elongation factor 2