HL_9AXU_026

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

9AXU|1|2|A|1301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AXU_026 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.4517

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9AXU|1|2|U|1298
9AXU|1|2|G|1299
9AXU|1|2|U|1300
9AXU|1|2|A|1301
9AXU|1|2|A|1302
9AXU|1|2|C|1303
9AXU|1|2|A|1304
9AXU|1|2|A|1305

Current chains

Chain 2

28S ribosomal RNA

Nearby chains