HL_11HV_034

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

11HV|1|28|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_034 not in the Motif Atlas

Homologous match to HL_9PN5_036

Geometric discrepancy: 0.1586

The information below is about HL_9PN5_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

11HV|1|28|G|2624
11HV|1|28|U|2625
11HV|1|28|U|2626
11HV|1|28|C|2627
11HV|1|28|U|2628
11HV|1|28|C|2629
11HV|1|28|U|2630
11HV|1|28|U|2631
11HV|1|28|U|2632

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 22

Large ribosomal subunit protein eL22