HL_11HV_045

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

11HV|1|28|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11HV_045 not in the Motif Atlas

Homologous match to HL_9H3G_053

Geometric discrepancy: 0.0686

The information below is about HL_9H3G_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

11HV|1|28|U|3796
11HV|1|28|C|3797
11HV|1|28|U|3798
11HV|1|28|A|3799
11HV|1|28|A|3800
11HV|1|28|U|3801
11HV|1|28|U|3802
11HV|1|28|A|3803
11HV|1|28|G|3804

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 25

Large ribosomal subunit protein uL14