HL_11IQ_006

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

11IQ|1|18|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_006 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.1375

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11IQ|1|18|G|377
11IQ|1|18|U|378
11IQ|1|18|C|379
11IQ|1|18|G|380
11IQ|1|18|C|381
11IQ|1|18|C|382
11IQ|1|18|G|383
11IQ|1|18|U|384
11IQ|1|18|G|385
11IQ|1|18|C|386
11IQ|1|18|C|387

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S8

40S ribosomal protein S8