HL_11IQ_008
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 11IQ|1|18|C|450, 11IQ|1|18|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11IQ_008 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.1097
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.3
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11IQ|1|18|C|441
11IQ|1|18|C|442
11IQ|1|18|U|443
11IQ|1|18|G|444
11IQ|1|18|A|445
11IQ|1|18|G|446
11IQ|1|18|A|447
11IQ|1|18|A|448
11IQ|1|18|A|449
11IQ|1|18|C|450
11IQ|1|18|G|451
11IQ|1|18|G|452
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
- Chain SS
- 40S ribosomal protein S24
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