HL_11IQ_052

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

11IQ|1|28|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_052 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.1449

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

11IQ|1|28|C|1816
11IQ|1|28|U|1817
11IQ|1|28|G|1818
11IQ|1|28|G|1819
11IQ|1|28|U|1820
11IQ|1|28|G|1821
11IQ|1|28|U|1822
11IQ|1|28|G|1823

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain L5

60S ribosomal protein L5