HL_11IQ_080

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

11IQ|1|28|A|4214, 11IQ|1|28|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11IQ_080 not in the Motif Atlas

Homologous match to HL_8GLP_060

Geometric discrepancy: 0.044

The information below is about HL_8GLP_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11IQ|1|28|U|4210
11IQ|1|28|C|4211
11IQ|1|28|A|4212
11IQ|1|28|A|4213
11IQ|1|28|A|4214
11IQ|1|28|C|4215
11IQ|1|28|G|4216
11IQ|1|28|G|4217
11IQ|1|28|U|4218
11IQ|1|28|A|4219
11IQ|1|28|A|4220
11IQ|1|28|C|4221
11IQ|1|28|G|4222

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29