HL_11IQ_098
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11IQ_098 not in the Motif Atlas
- Homologous match to HL_9AXU_071
- Geometric discrepancy: 0.1686
- The information below is about HL_9AXU_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
11IQ|1|58|C|47
11IQ|1|58|A|48
11IQ|1|58|G|49
11IQ|1|58|C|50
11IQ|1|58|U|51
11IQ|1|58|A|52
11IQ|1|58|G|53
11IQ|1|58|C|54
11IQ|1|58|U|55
11IQ|1|58|G|56
Current chains
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 35
- 60S ribosomal protein L35
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain cc
- Large ribosomal subunit protein uL23
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