HL_11JJ_005

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

11JJ|1|18|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_005 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2885

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

11JJ|1|18|G|288
11JJ|1|18|G|289
11JJ|1|18|U|290
11JJ|1|18|G|291
11JJ|1|18|A|292
11JJ|1|18|C|293
11JJ|1|18|U|294
11JJ|1|18|C|295

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6