HL_11JJ_008

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

11JJ|1|18|C|450, 11JJ|1|18|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_008 not in the Motif Atlas

Homologous match to HL_9PN5_086

Geometric discrepancy: 0.1532

The information below is about HL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.3

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

11JJ|1|18|C|441
11JJ|1|18|C|442
11JJ|1|18|U|443
11JJ|1|18|G|444
11JJ|1|18|A|445
11JJ|1|18|G|446
11JJ|1|18|A|447
11JJ|1|18|A|448
11JJ|1|18|A|449
11JJ|1|18|C|450
11JJ|1|18|G|451
11JJ|1|18|G|452

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8

Chain SS

40S ribosomal protein S24