HL_11JJ_015

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

11JJ|1|18|G|821, 11JJ|1|18|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_015 not in the Motif Atlas

Homologous match to HL_9PN5_092

Geometric discrepancy: 0.2254

The information below is about HL_9PN5_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

11JJ|1|18|U|820
11JJ|1|18|G|821
11JJ|1|18|U|822
11JJ|1|18|U|823
11JJ|1|18|C|824
11JJ|1|18|A|825
11JJ|1|18|A|826
11JJ|1|18|A|827
11JJ|1|18|G|828

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9

Chain SS

40S ribosomal protein S24