HL_11JJ_020

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

11JJ|1|18|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_020 not in the Motif Atlas

Homologous match to HL_9H3G_095

Geometric discrepancy: 0.204

The information below is about HL_9H3G_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

11JJ|1|18|G|1054
11JJ|1|18|A|1055
11JJ|1|18|U|1056
11JJ|1|18|C|1057
11JJ|1|18|A|1058
11JJ|1|18|G|1059
11JJ|1|18|A|1060
11JJ|1|18|U|1061
11JJ|1|18|A|1062
11JJ|1|18|C|1063
11JJ|1|18|C|1064

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain GG

Small ribosomal subunit protein uS11

Chain IF

IFRD2

Chain UU

eS26