HL_11JJ_031
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 11JJ|1|18|U|1621, 11JJ|1|18|U|1622, 11JJ|1|18|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_031 not in the Motif Atlas
- Homologous match to HL_9PN5_108
- Geometric discrepancy: 0.1876
- The information below is about HL_9PN5_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
11JJ|1|18|A|1614
11JJ|1|18|U|1615
11JJ|1|18|U|1616
11JJ|1|18|G|1617
11JJ|1|18|C|1618
11JJ|1|18|A|1619
11JJ|1|18|A|1620
11JJ|1|18|U|1621
11JJ|1|18|U|1622
11JJ|1|18|A|1623
11JJ|1|18|U|1624
11JJ|1|18|U|1625
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS19
- Chain LL
- 40S ribosomal protein S18
- Chain MM
- Small ribosomal subunit protein eS19
- Chain XX
- 40S ribosomal protein S29
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