HL_11JJ_041
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 11JJ|1|28|G|294, 11JJ|1|28|A|295, 11JJ|1|28|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_11JJ_041 not in the Motif Atlas
- Homologous match to HL_8GLP_008
- Geometric discrepancy: 0.087
- The information below is about HL_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_63894.4
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
11JJ|1|28|C|289
11JJ|1|28|U|290
11JJ|1|28|U|291
11JJ|1|28|G|292
11JJ|1|28|G|293
11JJ|1|28|G|294
11JJ|1|28|A|295
11JJ|1|28|A|296
11JJ|1|28|U|297
11JJ|1|28|G|298
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 42
- eL42
- Chain dd
- 60S ribosomal protein L27a
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