HL_11JJ_054

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

11JJ|1|28|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_054 not in the Motif Atlas

Homologous match to HL_8GLP_027

Geometric discrepancy: 0.1878

The information below is about HL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.4

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

11JJ|1|28|C|1816
11JJ|1|28|U|1817
11JJ|1|28|G|1818
11JJ|1|28|G|1819
11JJ|1|28|U|1820
11JJ|1|28|G|1821
11JJ|1|28|U|1822
11JJ|1|28|G|1823

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain L5

60S ribosomal protein L5