HL_11JJ_057

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

11JJ|1|28|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_057 not in the Motif Atlas

Homologous match to HL_9AXU_025

Geometric discrepancy: 0.3089

The information below is about HL_9AXU_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|C|1978
11JJ|1|28|A|1979
11JJ|1|28|U|1980
11JJ|1|28|G|1981
11JJ|1|28|G|1982
11JJ|1|28|A|1983
11JJ|1|28|A|1984
11JJ|1|28|G|1985
11JJ|1|28|U|1986
11JJ|1|28|C|1987
11JJ|1|28|G|1988

Current chains

Chain 28

28S rRNA

Nearby chains

Chain t

uL11

Chain v

Elongation factor 2