HL_11JJ_070

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

11JJ|1|28|C|2739, 11JJ|1|28|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_070 not in the Motif Atlas

Homologous match to HL_8GLP_044

Geometric discrepancy: 0.1361

The information below is about HL_8GLP_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

11JJ|1|28|C|2738
11JJ|1|28|C|2739
11JJ|1|28|U|2740
11JJ|1|28|U|2741
11JJ|1|28|G|2742

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L8

Chain ff

60S ribosomal protein L37a