HL_11JJ_079

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

11JJ|1|28|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_079 not in the Motif Atlas

Homologous match to HL_9PN5_048

Geometric discrepancy: 0.0837

The information below is about HL_9PN5_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

11JJ|1|28|U|3796
11JJ|1|28|C|3797
11JJ|1|28|U|3798
11JJ|1|28|A|3799
11JJ|1|28|A|3800
11JJ|1|28|U|3801
11JJ|1|28|U|3802
11JJ|1|28|A|3803
11JJ|1|28|G|3804

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 23

Large ribosomal subunit protein uL14