HL_11JJ_081

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

11JJ|1|28|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_081 not in the Motif Atlas

Homologous match to HL_8GLP_059

Geometric discrepancy: 0.0892

The information below is about HL_8GLP_059

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

11JJ|1|28|C|4193
11JJ|1|28|U|4194
11JJ|1|28|G|4195
11JJ|1|28|G|4196
11JJ|1|28|G|4197
11JJ|1|28|G|4198
11JJ|1|28|C|4199
11JJ|1|28|G|4200
11JJ|1|28|G|4201

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 29

Large ribosomal subunit protein eL29

Chain IF

IFRD2