HL_11JJ_085

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_085 not in the Motif Atlas

Homologous match to HL_9H3G_059

Geometric discrepancy: 0.217

The information below is about HL_9H3G_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|U|4301
11JJ|1|28|U|4302
11JJ|1|28|C|4303
11JJ|1|28|A|4304
11JJ|1|28|G|4305
11JJ|1|28|U|4306
11JJ|1|28|A|4307
11JJ|1|28|C|4308
11JJ|1|28|G|4309

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a