HL_11JJ_098

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

11JJ|1|58|U|110, 11JJ|1|58|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11JJ_098 not in the Motif Atlas

Homologous match to HL_9AXU_073

Geometric discrepancy: 0.1679

The information below is about HL_9AXU_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

11JJ|1|58|C|107
11JJ|1|58|A|108
11JJ|1|58|C|109
11JJ|1|58|U|110
11JJ|1|58|U|111
11JJ|1|58|G|112

Current chains

Chain 58

5.8S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39