HL_9AXU_073

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

9AXU|1|4|A|119, 9AXU|1|4|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9AXU|1|4|C|116
9AXU|1|4|A|117
9AXU|1|4|C|118
9AXU|1|4|A|119
9AXU|1|4|U|120
9AXU|1|4|U|121
9AXU|1|4|G|122

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain j

Large ribosomal subunit protein uL23A

Chain v

Large ribosomal subunit protein eL37B

Chain x

Large ribosomal subunit protein eL39