HL_11KH_093

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

11KH|1|28|A|4910, 11KH|1|28|A|4911, 11KH|1|28|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11KH_093 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.5376

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

11KH|1|28|C|4906
11KH|1|28|G|4907
11KH|1|28|G|4908
11KH|1|28|A|4909
11KH|1|28|A|4910
11KH|1|28|A|4911
11KH|1|28|G|4912
11KH|1|28|G|4913
11KH|1|28|G|4914
11KH|1|28|G|4915

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13