HL_8GLP_074

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8GLP|1|L5|G|4910, 8GLP|1|L5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_074 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.0858

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8GLP|1|L5|G|4907
8GLP|1|L5|G|4908
8GLP|1|L5|A|4909
8GLP|1|L5|G|4910
8GLP|1|L5|A|4911
8GLP|1|L5|G|4912
8GLP|1|L5|G|4913
8GLP|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a