HL_1A4T_003

3D structure

PDB id

1A4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUGACAAAG

Length

9 nucleotides

Bulged bases

1A4T|3|A|C|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1A4T_003 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2577

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1A4T|3|A|C|7
1A4T|3|A|U|8
1A4T|3|A|G|9
1A4T|3|A|A|10
1A4T|3|A|C|11
1A4T|3|A|A|12
1A4T|3|A|A|13
1A4T|3|A|A|14
1A4T|3|A|G|15

Current chains

Chain A

BOXB RNA

Nearby chains

Chain B

20-MER BASIC PEPTIDE