HL_1DDY_002

3D structure

PDB id

1DDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACCUCAG

Length

8 nucleotides

Bulged bases

1DDY|1|C|C|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1DDY_002 not in the Motif Atlas

Geometric match to HL_1ET4_001

Geometric discrepancy: 0.0733

The information below is about HL_1ET4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.4

Basepair signature

cWW-cWW-cSH-F

Number of instances in this motif group

5

Unit IDs

1DDY|1|C|C|219
1DDY|1|C|A|220
1DDY|1|C|C|221
1DDY|1|C|C|222
1DDY|1|C|U|223
1DDY|1|C|C|224
1DDY|1|C|A|225
1DDY|1|C|G|226

Current chains

Chain C

VITAMIN B12 BINDING RNA

Nearby chains

Chain E

VITAMIN B12 BINDING RNA