HL_1DDY_003

3D structure

PDB id

1DDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACCUCAG

Length

8 nucleotides

Bulged bases

1DDY|1|E|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1DDY_003 not in the Motif Atlas

Geometric match to HL_1ET4_001

Geometric discrepancy: 0.0744

The information below is about HL_1ET4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.4

Basepair signature

cWW-cWW-cSH-F

Number of instances in this motif group

5

Unit IDs

1DDY|1|E|C|419
1DDY|1|E|A|420
1DDY|1|E|C|421
1DDY|1|E|C|422
1DDY|1|E|U|423
1DDY|1|E|C|424
1DDY|1|E|A|425
1DDY|1|E|G|426

Current chains

Chain E

VITAMIN B12 BINDING RNA

Nearby chains

Chain C

VITAMIN B12 BINDING RNA