HL_1EBS_005

3D structure

PDB id

1EBS (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1EBS_005 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3809

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

1EBS|5|A|C|12
1EBS|5|A|U|13
1EBS|5|A|U|14
1EBS|5|A|C|15
1EBS|5|A|G|16
1EBS|5|A|G|17

Current chains

Chain A

HIV-1 REV RESPONSIVE ELEMENT RNA

Nearby chains