HL_1F84_033

3D structure

PDB id

1F84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF HCV IRES RNA DOMAIN IIID

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

1F84|15|A|U|14, 1F84|15|A|U|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1F84_033 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3112

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

1F84|15|A|U|11
1F84|15|A|G|12
1F84|15|A|U|13
1F84|15|A|U|14
1F84|15|A|G|15
1F84|15|A|G|16
1F84|15|A|G|17
1F84|15|A|U|18
1F84|15|A|C|19
1F84|15|A|G|20

Current chains

Chain A

HCV-1B IRES RNA DOMAIN IIID

Nearby chains