HL_1FFK_029

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

1FFK|1|0|U|1279

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_029 not in the Motif Atlas

Homologous match to HL_4V9F_032

Geometric discrepancy: 0.0664

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1FFK|1|0|A|1274
1FFK|1|0|C|1275
1FFK|1|0|U|1276
1FFK|1|0|C|1277
1FFK|1|0|A|1278
1FFK|1|0|U|1279
1FFK|1|0|A|1280
1FFK|1|0|C|1281
1FFK|1|0|U|1282

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L18E

Chain V

RIBOSOMAL PROTEIN L32E