HL_1FFK_040

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGGCGAAAG

Length

9 nucleotides

Bulged bases

1FFK|1|0|A|1710

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_040 not in the Motif Atlas

Homologous match to HL_4V9F_043

Geometric discrepancy: 0.0392

The information below is about HL_4V9F_043

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

1FFK|1|0|C|1705
1FFK|1|0|G|1706
1FFK|1|0|G|1707
1FFK|1|0|C|1708
1FFK|1|0|G|1709
1FFK|1|0|A|1710
1FFK|1|0|A|1711
1FFK|1|0|A|1712
1FFK|1|0|G|1713

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19