HL_1HC8_004

3D structure

PDB id

1HC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HC8_004 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.0712

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1HC8|1|D|C|342
1HC8|1|D|G|343
1HC8|1|D|U|344
1HC8|1|D|A|345
1HC8|1|D|A|346
1HC8|1|D|U|347
1HC8|1|D|A|348
1HC8|1|D|G|349

Current chains

Chain D

58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN

Nearby chains