HL_1HR0_033

3D structure

PDB id

1HR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

1HR0|1|A|U|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HR0_033 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.3874

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1HR0|1|A|G|1133
1HR0|1|A|G|1134
1HR0|1|A|U|1135
1HR0|1|A|U|1136
1HR0|1|A|C|1137
1HR0|1|A|G|1138
1HR0|1|A|G|1139
1HR0|1|A|C|1140
1HR0|1|A|C|1141

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9