HL_1HS4_001

3D structure

PDB id

1HS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUUAAAUC

Length

8 nucleotides

Bulged bases

1HS4|1|A|A|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HS4_001 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.2047

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

1HS4|1|A|G|3
1HS4|1|A|U|4
1HS4|1|A|U|5
1HS4|1|A|A|6
1HS4|1|A|A|7
1HS4|1|A|A|8
1HS4|1|A|U|9
1HS4|1|A|C|10

Current chains

Chain A

5'-R(*GP*CP*GP*UP*UP*AP*AP*AP*UP*CP*GP*CP*A)-3'

Nearby chains