HL_1I94_025

3D structure

PDB id

1I94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

1I94|1|A|G|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1I94_025 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1483

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

1I94|1|A|G|1071
1I94|1|A|U|1072
1I94|1|A|U|1073
1I94|1|A|A|1074
1I94|1|A|A|1075
1I94|1|A|G|1076
1I94|1|A|U|1077
1I94|1|A|C|1078

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2