HL_1IBK_006

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

1IBK|1|A|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IBK_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0659

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1IBK|1|A|G|259
1IBK|1|A|G|260
1IBK|1|A|U|261
1IBK|1|A|A|262
1IBK|1|A|A|263
1IBK|1|A|U|264
1IBK|1|A|G|265
1IBK|1|A|G|266
1IBK|1|A|C|267

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20