HL_1J5A_006

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

1J5A|1|A|A|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_006 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3558

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1J5A|1|A|A|172
1J5A|1|A|A|173
1J5A|1|A|A|174
1J5A|1|A|C|175
1J5A|1|A|A|176
1J5A|1|A|U|177

Current chains

Chain A

23S RRNA

Nearby chains