HL_1J5A_007

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAUU

Length

6 nucleotides

Bulged bases

1J5A|1|A|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_007 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.3205

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

1J5A|1|A|A|202
1J5A|1|A|G|203
1J5A|1|A|A|204
1J5A|1|A|A|205
1J5A|1|A|U|206
1J5A|1|A|U|207

Current chains

Chain A

23S RRNA

Nearby chains