HL_1J5A_009

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1J5A|1|A|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.2212

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

1J5A|1|A|C|316
1J5A|1|A|U|317
1J5A|1|A|G|318
1J5A|1|A|G|319
1J5A|1|A|A|320
1J5A|1|A|A|321
1J5A|1|A|A|322
1J5A|1|A|G|323

Current chains

Chain A

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L22